diff --git a/src/main/kotlin/group/ouroboros/potrogue/data/config/Config.kt b/src/main/kotlin/group/ouroboros/potrogue/data/config/Config.kt
index a787423..09782ed 100644
--- a/src/main/kotlin/group/ouroboros/potrogue/data/config/Config.kt
+++ b/src/main/kotlin/group/ouroboros/potrogue/data/config/Config.kt
@@ -12,23 +12,26 @@ import java.util.*
 
 val prop = Properties()
 class Config {
-    private val file = File("./run/potrogue.conf")
+    val runDir = File("./run")
+    val confFile = File("./run/potrogue.conf")
     private val prop = Properties()
-    private var fileExists = file.exists()
+    private var runDirExists = runDir.exists()
     init {
-        //Check if config file exists, if it does, load it
-        if(fileExists){
-            FileInputStream(file).use { prop.load(it) }
+        //Check if the directories and files exist, if not, create them. Also check if config version is incorrect.
+        //TODO: DataPacks and Advanced configuration system (see values.conf in jar)
+        //Files.createDirectories(Paths.get("./run/data"))
+        if(!runDirExists){
+            Files.createDirectories(Paths.get("./run"))
+        }
+        if(confFile.exists()) {
+            FileInputStream(confFile).use { prop.load(it) }
         }
         //Otherwise create the necessary directories
         else{
-            Files.createDirectories(Paths.get("./run"))
-            Files.createDirectories(Paths.get("./run/tiles"))
-            //TODO: DataPacks and Advanced configuration system (see values.conf in jar)
-            //Files.createDirectories(Paths.get("./run/data"))
             Files.createFile(Path.of("./run/potrogue.conf"))
-            FileInputStream(file).use {
+            FileInputStream(confFile).use {
                 prop.load(it)
+                prop.setProperty("configVersion", "1")
                 prop.setProperty("windowWidth", "80")
                 prop.setProperty("windowHeight", "54")
                 prop.setProperty("dungeonLevels", "2")
@@ -38,7 +41,7 @@ class Config {
                 prop.setProperty("creaturesPerLevel", "15")
                 prop.setProperty("creatureMaxSpread", "20")
             }
-                val out: OutputStream = FileOutputStream(file)
+                val out: OutputStream = FileOutputStream(confFile)
                 prop.store(out, "PotRogue Configuration File, restart game if changed value. HERE BE DRAGONS.")
         }
 }
@@ -59,4 +62,6 @@ class Config {
     val creaturesPerLevel: Int = (prop.getProperty("creaturesPerLevel")).toInt()
 
     val creatureMaxSpread: Int = (prop.getProperty("creatureMaxSpread")).toInt()
+
+    val configVersion: Int = (prop.getProperty("configVersion")).toInt()
 }
\ No newline at end of file
diff --git a/src/main/kotlin/group/ouroboros/potrogue/main.kt b/src/main/kotlin/group/ouroboros/potrogue/main.kt
index c799c06..cc09de8 100644
--- a/src/main/kotlin/group/ouroboros/potrogue/main.kt
+++ b/src/main/kotlin/group/ouroboros/potrogue/main.kt
@@ -8,9 +8,13 @@ import org.hexworks.zircon.api.SwingApplications
 // Important Values
 const val GAME_ID = "PotRogue"
 const val GAME_VER = "0.1.0-DEV"
+const val confVers = 1
 
 fun main() {
     Config()
+    if (Config().configVersion != confVers){
+        Config().confFile.delete()
+    }
     // Start Application
     val grid = SwingApplications.startTileGrid(GameConfig.buildAppConfig())
     StartView(grid).dock()